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Microorganisms in Endoscopy

This overview includes the most relevant pathogens in endoscopy. Find here background information on microorganisms, most common associated infections, transmission routes, and, if applicable, their resistance to antibiotics.

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  • Acinetobacter spp.
  • Bacillus anthracis
  • Bacteroides fragilis
  • Blastomyces dermatitidis
  • Burkholderia cepacia
  • Candida albicans
  • Citrobacter spp.
  • Clostridioides difficile
  • Cryptosporidium
  • Cryptosporidium parvum
  • Elizabethkingia meningoseptica
  • Enterobacter cloacae
  • Escherichia coli
  • Giardia intestinalis
  • Hepatitis B virus (HBV)
  • Hepatitis C virus (HCV)
  • Helicobacter pylori
  • Human immunodeficiency virus (HIV)
  • Klebsiella pneumoniae
  • Legionella pneumophila
  • Listeria monocytogenes
  • Methylobacterium mesophilicum
  • Morganella morganii
  • Mycobacterium avium
  • Mycobacterium chelonae
  • Mycobacterium fortuitum
  • Mycobacterium gordonae
  • Mycobacterium intracellulare
  • Mycobacterium tuberculosis
  • Mycobacterium xenopi
  • Pneumocystis jirovecii
  • Proteus spp.
  • Proteus vulgaris
  • Pseudomonas aeruginosa
  • Pseudomonas putida
  • Rhodotorula mucilaginosa
  • Salmonella
  • Salmonella typhi
  • Salmonella typhimurium
  • SARS-CoV-2
  • Serratia marcescens
  • Staphylococcus aureus
  • Staphylococcus epidermidis
  • Stenotrophomonas maltophilia
  • Stenotrophomonas spp.
  • Streptococcus spp.
  • Strongyloides stercoralis
  • Trichosporon spp.
  • Tropheryma whipplei
  • Viridans streptococci
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